Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SFL96642.1Esterase, PHB depolymerase family. (402 aa)    
Predicted Functional Partners:
SFL96614.1
Hypothetical protein.
 
     0.933
SFK71248.1
Right handed beta helix region.
   
 
 0.693
SFL62359.1
Polyhydroxyalkanoate synthase.
    
 0.651
SFK28533.1
Polyhydroxyalkanoate depolymerase, intracellular.
 
  
 0.483
dnaQ
DNA polymerase-3 subunit epsilon; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease.
       0.443
SFL44805.1
3',5'-cyclic AMP phosphodiesterase CpdA.
  
     0.420
SFK28663.1
Polyhydroxyalkanoate depolymerase, intracellular.
    
 0.409
SFK62943.1
Poly(3-hydroxybutyrate) depolymerase.
    
 0.409
ureB
Urease subunit gamma/beta; Belongs to the urease beta subunit family.
       0.408
Your Current Organism:
Methylorubrum salsuginis
NCBI taxonomy Id: 414703
Other names: CGMCC 1.6474, M. salsuginis, Methylobacterium salsuginis, Methylobacterium salsuginis Wang et al. 2007, NCCB 100140, NCIMB 14847, strain MR
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