Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SFL99878.1DDE superfamily endonuclease. (58 aa)    
Predicted Functional Partners:
SFL92257.1
Transposase.
 
     0.793
SFL78518.1
Transposase.
 
    0.792
SFL31753.1
Transposase.
 
     0.788
SFL94295.1
Transposase.
 
     0.788
SFM09090.1
Transposase.
 
     0.788
SFL31736.1
Transposase.
 
     0.773
SFL94273.1
Transposase.
 
     0.773
SFM09065.1
Transposase.
 
     0.773
SFL99902.1
Hypothetical protein.
       0.723
SFL99926.1
Hypothetical protein.
       0.478
Your Current Organism:
Methylorubrum salsuginis
NCBI taxonomy Id: 414703
Other names: CGMCC 1.6474, M. salsuginis, Methylobacterium salsuginis, Methylobacterium salsuginis Wang et al. 2007, NCCB 100140, NCIMB 14847, strain MR
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