Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SFM01242.1Choline dehydrogenase. (526 aa)    
Predicted Functional Partners:
SFM01364.1
Catechol 2,3-dioxygenase.
 
   
 0.813
SFL71794.1
Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein.
 
   
 0.756
SFM07259.1
Choline dehydrogenase.
  
     0.741
betI
Transcriptional regulator, TetR family; Repressor involved in choline regulation of the bet genes.
  
 
 0.740
SFK85530.1
Cytochrome c, mono-and diheme variants.
  
 0.740
SFL30126.1
Cytochrome c, mono-and diheme variants.
  
 0.740
SFK28086.1
Hypothetical protein.
    
 0.729
SFL89966.1
Hypothetical protein.
    
 0.729
tal
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the GPI family.
   
 
 0.722
SFL19590.1
Cytochrome c.
  
 0.706
Your Current Organism:
Methylorubrum salsuginis
NCBI taxonomy Id: 414703
Other names: CGMCC 1.6474, M. salsuginis, Methylobacterium salsuginis, Methylobacterium salsuginis Wang et al. 2007, NCCB 100140, NCIMB 14847, strain MR
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