Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SFM04143.1TRAP-type uncharacterized transport system, substrate-binding protein. (472 aa)    
Predicted Functional Partners:
SFM04115.1
Transporter family-2 protein.
       0.774
SFM04167.1
RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
       0.773
SFM04091.1
Arsenite efflux membrane protein ArsB.
       0.746
SFK80250.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
  
 0.734
SFK80203.1
TRAP transporter, DctM subunit.
  
  
  0.708
SFM04039.1
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains.
    
  0.684
SFK68917.1
TRAP-type mannitol/chloroaromatic compound transport system, substrate-binding protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
   
 
 0.647
SFL81234.1
PAS domain S-box-containing protein.
    
  0.646
SFL31108.1
Membrane protein involved in the export of O-antigen and teichoic acid.
  
     0.644
SFL26751.1
Putative tricarboxylic transport membrane protein.
  
  
 0.633
Your Current Organism:
Methylorubrum salsuginis
NCBI taxonomy Id: 414703
Other names: CGMCC 1.6474, M. salsuginis, Methylobacterium salsuginis, Methylobacterium salsuginis Wang et al. 2007, NCCB 100140, NCIMB 14847, strain MR
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