Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SFM07113.1Transposase. (118 aa)    
Predicted Functional Partners:
SFM07136.1
Transposase.
 
     0.915
SFM07090.1
Transposase.
     
 0.833
SFL57785.1
Transposase.
 
     0.797
SFM01016.1
Transposase.
 
     0.797
SFM01077.1
Transposase.
 
   
 0.671
SFM07278.1
Transposase C of IS166 homeodomain-containing protein.
 
     0.568
SFL57851.1
Transposase.
 
   
 0.484
SFM07067.1
Hypothetical protein.
       0.471
SFL49195.1
Aconitate hydratase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
     
  0.450
Your Current Organism:
Methylorubrum salsuginis
NCBI taxonomy Id: 414703
Other names: CGMCC 1.6474, M. salsuginis, Methylobacterium salsuginis, Methylobacterium salsuginis Wang et al. 2007, NCCB 100140, NCIMB 14847, strain MR
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