Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SFM08200.1Site-specific recombinase XerD; Belongs to the 'phage' integrase family. (545 aa)    
Predicted Functional Partners:
SFK34011.1
Hypothetical protein.
  
     0.674
SFM08220.1
Transposase DDE domain-containing protein.
       0.639
SFL76949.1
L-proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
     
  0.626
SFL97685.1
Hypothetical protein.
  
     0.594
SFL77333.1
comF family protein.
   
    0.581
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
    0.573
SFL39930.1
Cyclohexadieny/prephenate dehydrogenase.
  
    0.554
SFL74817.1
Hypothetical protein.
  
     0.527
SFK76692.1
Hypothetical protein.
  
     0.507
SFK37764.1
Chromosome segregation ATPase.
 
   
 0.492
Your Current Organism:
Methylorubrum salsuginis
NCBI taxonomy Id: 414703
Other names: CGMCC 1.6474, M. salsuginis, Methylobacterium salsuginis, Methylobacterium salsuginis Wang et al. 2007, NCCB 100140, NCIMB 14847, strain MR
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