Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SDZ15470.1Stage V sporulation protein AB. (140 aa)    
Predicted Functional Partners:
SDZ15452.1
Stage V sporulation protein AA.
 
    0.947
SDZ15508.1
Stage V sporulation protein AD.
 
  
 0.885
SDZ15489.1
Stage V sporulation protein AC.
 
  
 0.881
SDZ15526.1
Stage V sporulation protein AE.
 
  
 0.801
SDZ15437.1
Hypothetical protein.
       0.709
SDZ15420.1
RNA polymerase, sigma subunit, RpoX/SigF; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
     0.702
SDZ15546.1
Stage V sporulation protein AE.
  
  
 0.693
spoIIAB
Stage II sporulation protein AB (anti-sigma F factor); Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition.
 
     0.669
SDZ15387.1
Anti-anti-sigma regulatory factor, SpoIIAA; Belongs to the anti-sigma-factor antagonist family.
 
     0.633
SDY57418.1
Stage II sporulation protein E.
  
     0.625
Your Current Organism:
Proteiniborus ethanoligenes
NCBI taxonomy Id: 415015
Other names: CGMCC 1.5055, DSM 21650, JCM 14574, P. ethanoligenes, Proteiniborus ethanoligenes Niu et al. 2008, strain GW
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