STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABX20372.1Hypothetical protein; KEGG: reh:H16_B0946 1.3e-42 predicted iron-dependent peroxidase K00430; COG: COG2837 Predicted iron-dependent peroxidase; Psort location: Cytoplasmic, score:8.96. (298 aa)    
Predicted Functional Partners:
ABX20979.1
COG: COG2372 Uncharacterized protein, homolog of Cu resistance protein CopC; Psort location: Periplasmic, score:9.76.
  
  
 0.664
ABX20371.1
Hypothetical protein; COG: NOG06776 non supervised orthologous group.
 
    0.618
ABX23477.1
Hypothetical protein; KEGG: sty:STY3573 3.3e-94 hemG; protoporphyrinogen oxidase K00230; COG: COG4635 Flavodoxin.
     
 0.555
ABX20370.1
Hypothetical protein; COG: NOG08687 non supervised orthologous group; Psort location: CytoplasmicMembrane, score:9.46.
     
 0.532
rlmD
Hypothetical protein; Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
 
      0.514
tatB
Hypothetical protein; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation.
 
  
 0.472
ABX20205.1
Hypothetical protein; KEGG: sec:SC2669 7.3e-200 pheA; bifuctional: chorismate mutase P; prephenate dehydratase K04093:K04518; COG: COG0077 Prephenate dehydratase; Psort location: Cytoplasmic, score:9.97.
     
 0.449
dnaK
Hypothetical protein; Acts as a chaperone; Belongs to the heat shock protein 70 family.
      
 0.446
ypeA
Hypothetical protein; KEGG: eci:UTI89_C2767 4.7e-70 ypeA; hypothetical protein YpeA K00680; COG: COG0456 Acetyltransferases; Psort location: Cytoplasmic, score:8.96.
       0.418
ABX21113.1
Hypothetical protein; KEGG: bur:Bcep18194_B0119 8.4e-96 oligopeptide/dipeptide ABC transporter, ATPase subunit K02032; COG: COG4608 ABC-type oligopeptide transport system, ATPase component; Psort location: CytoplasmicMembrane, score:9.59.
      
 0.410
Your Current Organism:
Salmonella enterica arizonae
NCBI taxonomy Id: 41514
Other names: S. enterica subsp. arizonae serovar 62:z4,z23:-, Salmonella enterica IIIa 62:z4,z23:-, Salmonella enterica serovar IIIa 62:z4,z23:-, Salmonella enterica subsp. arizonae serovar 62:z4,z23:-
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.