STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABX20976.1Hypothetical protein; KEGG: sec:SC1883 6.2e-123 exoX; DNA exonuclease X, degrades ss and ds DNA with 3'-5' polarity K01146; COG: COG0847 DNA polymerase III, epsilon subunit and related 3-5 exonucleases; Psort location: Cytoplasmic, score:8.96. (231 aa)    
Predicted Functional Partners:
ABX24380.1
Hypothetical protein; KEGG: sec:SC2982 0. recJ; ssDNA exonuclease, 5' --> 3' specific, Mg dependent K07462; COG: COG0608 Single-stranded DNA-specific exonuclease; Psort location: Cytoplasmic, score:8.96.
     
 0.819
ABX20977.1
Hypothetical protein; KEGG: psp:PSPPH_2956 0.00086 hydrolase, carbon-nitrogen family K01950; COG: COG0388 Predicted amidohydrolase.
 
    0.742
ABX20978.1
Hypothetical protein; KEGG: spt:SPA0993 4.0e-34 holE; DNA polymerase III, theta subunit K02345; COG: NOG13893 non supervised orthologous group.
   
   0.730
ABX23602.1
Hypothetical protein; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of replication [...]
  
 
 0.565
ABX22620.1
Hypothetical protein; KEGG: stm:STM0231 0. dnaE; DNA polymerase III, alpha subunit K02337; COG: COG0587 DNA polymerase III, alpha subunit; Psort location: Cytoplasmic, score:9.97.
   
 
 0.562
mdoC
Hypothetical protein; Necessary for the succinyl substitution of periplasmic glucans. Could catalyze the transfer of succinyl residues from the cytoplasmic side of the membrane to the nascent glucan backbones on the periplasmic side of the membrane.
  
     0.506
ABX21663.1
Hypothetical protein; KEGG: reu:Reut_B4338 0.0018 copper/zinc superoxide dismutase K04565; COG: NOG13874 non supervised orthologous group.
  
     0.500
ABX23511.1
Hypothetical protein; KEGG: spt:SPA3792 0. uvrD; DNA helicase II K03657; COG: COG0210 Superfamily I DNA and RNA helicases.
 
  
 0.497
nfi
Hypothetical protein; DNA repair enzyme involved in the repair of deaminated bases. Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA.
      
 0.491
polA
Hypothetical protein; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 
 0.490
Your Current Organism:
Salmonella enterica arizonae
NCBI taxonomy Id: 41514
Other names: S. enterica subsp. arizonae serovar 62:z4,z23:-, Salmonella enterica IIIa 62:z4,z23:-, Salmonella enterica serovar IIIa 62:z4,z23:-, Salmonella enterica subsp. arizonae serovar 62:z4,z23:-
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.