STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABX21610.1Hypothetical protein; COG: COG0668 Small-conductance mechanosensitive channel; Psort location: CytoplasmicMembrane, score:10.00. (377 aa)    
Predicted Functional Partners:
ABX21609.1
Hypothetical protein; KEGG: mja:MJ0155 0.0015 formate dehydrogenase, iron-sulfur subunit K00124; COG: COG1145 Ferredoxin; Psort location: Cytoplasmic, score:8.96.
 
     0.568
ABX24320.1
Hypothetical protein; COG: COG1414 Transcriptional regulator; Psort location: Cytoplasmic, score:8.96.
  
     0.506
gcvP
Hypothetical protein; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
   
    0.463
ABX20619.1
Hypothetical protein; COG: COG1396 Predicted transcriptional regulators; Psort location: Cytoplasmic, score:8.96.
  
     0.459
ABX23699.1
Hypothetical protein; COG: NOG25608 non supervised orthologous group; Psort location: Cytoplasmic, score:9.97; Belongs to the LysR transcriptional regulatory family.
  
    0.400
Your Current Organism:
Salmonella enterica arizonae
NCBI taxonomy Id: 41514
Other names: S. enterica subsp. arizonae serovar 62:z4,z23:-, Salmonella enterica IIIa 62:z4,z23:-, Salmonella enterica serovar IIIa 62:z4,z23:-, Salmonella enterica subsp. arizonae serovar 62:z4,z23:-
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.