Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABX22269.1COG: COG3539 P pilus assembly protein, pilin FimA. (228 aa)    
Predicted Functional Partners:
ABX22270.1
COG: COG3188 P pilus assembly protein, porin PapC; Psort location: OuterMembrane, score:10.00.
  
   0.799
ABX22271.1
COG: COG3121 P pilus assembly protein, chaperone PapD; Psort location: Periplasmic, score:10.00.
  
 
 0.749
ABX22272.1
COG: COG3539 P pilus assembly protein, pilin FimA; Psort location: Extracellular, score:9.72.
     
 0.619
ABX22273.1
COG: COG3539 P pilus assembly protein, pilin FimA; Psort location: Extracellular, score:10.00.
     
 0.509
Your Current Organism:
Salmonella enterica arizonae
NCBI taxonomy Id: 41514
Other names: S. enterica subsp. arizonae serovar 62:z4,z23:-, Salmonella enterica IIIa 62:z4,z23:-, Salmonella enterica serovar IIIa 62:z4,z23:-, Salmonella enterica subsp. arizonae serovar 62:z4,z23:-
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