STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABX22271.1COG: COG3121 P pilus assembly protein, chaperone PapD; Psort location: Periplasmic, score:10.00. (237 aa)    
Predicted Functional Partners:
ABX22272.1
COG: COG3539 P pilus assembly protein, pilin FimA; Psort location: Extracellular, score:9.72.
 
 
 0.990
ABX22273.1
COG: COG3539 P pilus assembly protein, pilin FimA; Psort location: Extracellular, score:10.00.
 
 
 0.989
ABX22270.1
COG: COG3188 P pilus assembly protein, porin PapC; Psort location: OuterMembrane, score:10.00.
 
 
 0.971
ABX21683.1
Hypothetical protein; KEGG: ddi:DDB0230105 0.0030 putative CLK family kinase K08287; COG: COG3188 P pilus assembly protein, porin PapC; Psort location: OuterMembrane, score:10.00.
 
 
 0.880
ABX22815.1
COG: COG3188 P pilus assembly protein, porin PapC; Psort location: OuterMembrane, score:10.00.
 
 
 0.880
ABX20671.1
COG: COG3188 P pilus assembly protein, porin PapC; Psort location: OuterMembrane, score:10.00.
 
 
 0.874
ABX21681.1
COG: COG3539 P pilus assembly protein, pilin FimA; Psort location: Extracellular, score:9.72.
 
   0.837
ABX22817.1
Hypothetical protein; KEGG: bme:BMEII0149 0.0099 extracellular serine protease; COG: COG3539 P pilus assembly protein, pilin FimA; Psort location: Extracellular, score:9.72.
 
 
 0.816
ABX22812.1
COG: COG3539 P pilus assembly protein, pilin FimA; Psort location: Extracellular, score:9.72.
 
   0.797
ABX22269.1
COG: COG3539 P pilus assembly protein, pilin FimA.
  
   0.748
Your Current Organism:
Salmonella enterica arizonae
NCBI taxonomy Id: 41514
Other names: S. enterica subsp. arizonae serovar 62:z4,z23:-, Salmonella enterica IIIa 62:z4,z23:-, Salmonella enterica serovar IIIa 62:z4,z23:-, Salmonella enterica subsp. arizonae serovar 62:z4,z23:-
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.