Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
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[Homology]
Score
ABX22292.1Hypothetical protein; COG: COG0390 ABC-type uncharacterized transport system, permease component; Psort location: CytoplasmicMembrane, score:10.00. (259 aa)    
Predicted Functional Partners:
ABX22293.1
Hypothetical protein; KEGG: psb:Psyr_0081 1.2e-27 ABC transporter K02045; COG: COG4619 ABC-type uncharacterized transport system, ATPase component; Psort location: CytoplasmicMembrane, score:7.88.
  
 0.978
ABX22294.1
Hypothetical protein; KEGG: reh:H16_A2036 4.4e-58 membrane protease subunits, stomatin/prohibitin homologs K01423; COG: COG0330 Membrane protease subunits, stomatin/prohibitin homologs.
     
 0.663
ABX22295.1
COG: COG1585 Membrane protein implicated in regulation of membrane protease activity; Psort location: CytoplasmicMembrane, score:9.46.
     
 0.555
Your Current Organism:
Salmonella enterica arizonae
NCBI taxonomy Id: 41514
Other names: S. enterica subsp. arizonae serovar 62:z4,z23:-, Salmonella enterica IIIa 62:z4,z23:-, Salmonella enterica serovar IIIa 62:z4,z23:-, Salmonella enterica subsp. arizonae serovar 62:z4,z23:-
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