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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABX22315.1Hypothetical protein; KEGG: rno:81762 3.1e-08 Rock1; Rho-associated coiled-coil forming kinase 1 K04514; COG: COG3264 Small-conductance mechanosensitive channel; Psort location: CytoplasmicMembrane, score:10.00. (1120 aa)    
Predicted Functional Partners:
ABX20922.1
COG: COG0589 Universal stress protein UspA and related nucleotide-binding proteins; Psort location: Cytoplasmic, score:9.97.
  
     0.602
ABX22317.1
Hypothetical protein; COG: COG1309 Transcriptional regulator; Psort location: Cytoplasmic, score:8.96.
       0.572
ABX21743.1
Hypothetical protein; COG: NOG09737 non supervised orthologous group; Psort location: CytoplasmicMembrane, score:9.46.
  
     0.538
ABX21985.1
Hypothetical protein; COG: COG1309 Transcriptional regulator; Psort location: Cytoplasmic, score:8.96.
  
     0.513
recC
Hypothetical protein; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme [...]
  
   
 0.502
yqfB
COG: COG3097 Uncharacterized protein conserved in bacteria; Psort location: Cytoplasmic, score:8.96; Belongs to the UPF0267 family.
  
     0.477
ABX21905.1
Hypothetical protein; KEGG: spt:SPA1863 8.0e-162 hcr; NADH oxidoreductase Hcr; COG: COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Psort location: Cytoplasmic, score:8.96.
  
     0.474
ABX22609.1
COG: COG3015 Uncharacterized lipoprotein NlpE involved in copper resistance.
  
     0.469
ABX20493.1
Hypothetical protein; COG: COG0471 Di- and tricarboxylate transporters; Psort location: CytoplasmicMembrane, score:10.00.
 
    0.445
zntB
Hypothetical protein; Mediates efflux of zinc ions; Belongs to the CorA metal ion transporter (MIT) (TC 1.A.35) family.
 
     0.437
Your Current Organism:
Salmonella enterica arizonae
NCBI taxonomy Id: 41514
Other names: S. enterica subsp. arizonae serovar 62:z4,z23:-, Salmonella enterica IIIa 62:z4,z23:-, Salmonella enterica serovar IIIa 62:z4,z23:-, Salmonella enterica subsp. arizonae serovar 62:z4,z23:-
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