Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABX22325.1Hypothetical protein; KEGG: mca:MCA1246 9.3e-33 methyltransferase CheR, putative K03412:K00575; COG: COG4943 Predicted signal transduction protein containing sensor and EAL domains; Psort location: CytoplasmicMembrane, score:9.82. (516 aa)    
Predicted Functional Partners:
ABX21587.1
Hypothetical protein; KEGG: eci:UTI89_C1612 2.6e-13 ydaM; hypothetical protein YdaM; COG: COG2199 FOG: GGDEF domain.
 
   
 0.887
ABX23816.1
Hypothetical protein; KEGG: eci:UTI89_C1702 0.00081 hypothetical protein; COG: COG2200 FOG: EAL domain; Psort location: Cytoplasmic, score:8.96.
  
   
 0.883
ABX22869.1
Hypothetical protein; KEGG: syn:sll1687 1.1e-25 hik17; hypothetical protein; COG: COG2199 FOG: GGDEF domain; Psort location: CytoplasmicMembrane, score:10.00.
   
 0.858
ABX20862.1
KEGG: vfi:VFA0796 1.3e-24 sensor protein; COG: COG2199 FOG: GGDEF domain.
   
 0.836
ABX20691.1
Hypothetical protein; KEGG: eci:UTI89_C2343 0. yegE; putative sensor-type protein; COG: COG2199 FOG: GGDEF domain; Psort location: CytoplasmicMembrane, score:10.00.
  
  
 0.712
ABX22975.1
Hypothetical protein; KEGG: syg:sync_2368 3.4e-13 arylsulfatase regulator; COG: COG0641 Arylsulfatase regulator (Fe-S oxidoreductase); Psort location: Cytoplasmic, score:8.96.
      
 0.585
rpmE2
COG: COG0254 Ribosomal protein L31.
       0.475
ABX22326.1
Hypothetical protein; KEGG: eci:UTI89_C0482 3.3e-46 ybaZ; hypothetical protein YbaZ K07443; COG: COG3695 Predicted methylated DNA-protein cysteine methyltransferase.
       0.406
Your Current Organism:
Salmonella enterica arizonae
NCBI taxonomy Id: 41514
Other names: S. enterica subsp. arizonae serovar 62:z4,z23:-, Salmonella enterica IIIa 62:z4,z23:-, Salmonella enterica serovar IIIa 62:z4,z23:-, Salmonella enterica subsp. arizonae serovar 62:z4,z23:-
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