Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ABX22337.1Hypothetical protein; COG: COG4533 ABC-type uncharacterized transport system, periplasmic component. (566 aa)    
Predicted Functional Partners:
yobD
COG: COG4811 Predicted membrane protein.
  
     0.754
secM
Hypothetical protein; Regulates secA expression by translational coupling of the secM secA operon. Translational pausing at a specific Pro residue 5 residues before the end of the protein may allow disruption of a mRNA repressor helix that normally suppresses secA translation initiation. Belongs to the SecM family.
  
     0.712
ABX19974.1
Hypothetical protein; KEGG: stm:STM2936 9.2e-177 iap; aminopeptidase K01269; COG: COG2234 Predicted aminopeptidases.
  
     0.710
ABX23389.1
COG: COG3152 Predicted membrane protein; Psort location: CytoplasmicMembrane, score:9.46.
  
     0.699
wecH
Hypothetical protein; Responsible for the incorporation of O-acetyl groups into the enterobacterial common antigen (ECA) trisaccharide repeat units.
  
     0.694
ABX22320.1
Hypothetical protein; COG: NOG09846 non supervised orthologous group.
  
     0.683
ynfB
Hypothetical protein; COG: NOG11441 non supervised orthologous group; Belongs to the UPF0482 family.
  
     0.680
ABX23805.1
Hypothetical protein; KEGG: vfi:VFA0886 3.2e-27 zinc metalloprotease; COG: NOG14695 non supervised orthologous group; Psort location: CytoplasmicMembrane, score:9.82.
  
     0.680
ABX21671.1
Hypothetical protein; COG: COG5633 Predicted periplasmic lipoprotein.
  
     0.670
ABX22395.1
Hypothetical protein; COG: NOG06193 non supervised orthologous group; Psort location: Cytoplasmic, score:8.96.
  
     0.668
Your Current Organism:
Salmonella enterica arizonae
NCBI taxonomy Id: 41514
Other names: S. enterica subsp. arizonae serovar 62:z4,z23:-, Salmonella enterica IIIa 62:z4,z23:-, Salmonella enterica serovar IIIa 62:z4,z23:-, Salmonella enterica subsp. arizonae serovar 62:z4,z23:-
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