Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABX23061.1Hypothetical protein; COG: COG3054 Predicted transcriptional regulator. (267 aa)    
Predicted Functional Partners:
ABX23060.1
Hypothetical protein; COG: NOG17567 non supervised orthologous group.
 
     0.866
ABX23747.1
Hypothetical protein; COG: COG3722 Transcriptional regulator; Psort location: Cytoplasmic, score:8.96.
  
     0.608
ABX20446.1
Hypothetical protein; COG: NOG13546 non supervised orthologous group; Psort location: Cytoplasmic, score:8.96.
  
     0.607
uspB
Hypothetical protein; COG: NOG09779 non supervised orthologous group.
  
     0.594
ABX21147.1
Hypothetical protein; COG: NOG13548 non supervised orthologous group; Psort location: Cytoplasmic, score:8.96.
  
     0.592
ycfP
Hypothetical protein; COG: COG3150 Predicted esterase; Psort location: Cytoplasmic, score:8.96; Belongs to the UPF0227 family.
  
     0.588
wecH
Hypothetical protein; Responsible for the incorporation of O-acetyl groups into the enterobacterial common antigen (ECA) trisaccharide repeat units.
  
     0.586
tus
Hypothetical protein; Trans-acting protein required for termination of DNA replication. Binds to DNA replication terminator sequences (terA to terF) to prevent the passage of replication forks. The termination efficiency will be affected by the affinity of this protein for the terminator sequence; Belongs to the Tus family.
  
     0.569
viaA
COG: COG2425 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain; Psort location: Cytoplasmic, score:8.96.
  
     0.569
alaE
Hypothetical protein; Exports L-alanine; Belongs to the AlaE exporter family.
  
     0.567
Your Current Organism:
Salmonella enterica arizonae
NCBI taxonomy Id: 41514
Other names: S. enterica subsp. arizonae serovar 62:z4,z23:-, Salmonella enterica IIIa 62:z4,z23:-, Salmonella enterica serovar IIIa 62:z4,z23:-, Salmonella enterica subsp. arizonae serovar 62:z4,z23:-
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