STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABX23181.1Hypothetical protein; KEGG: bur:Bcep18194_C7259 2.4e-105 ABC transporter, duplicated ATPase domains; COG: COG0488 ATPase components of ABC transporters with duplicated ATPase domains; Psort location: CytoplasmicMembrane, score:9.82. (523 aa)    
Predicted Functional Partners:
ABX23185.1
Hypothetical protein; KEGG: ech:ECH_1107 3.6e-14 thiF; adenylyltransferase ThiF; COG: COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2.
   
   0.787
ABX23182.1
Hypothetical protein; KEGG: bcz:BCZK2057 8.0e-20 macrolide efflux protein K00953; COG: COG0477 Permeases of the major facilitator superfamily; Psort location: CytoplasmicMembrane, score:10.00.
       0.773
ABX23183.1
Hypothetical protein; COG: KOG2130 Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain.
       0.773
ABX23184.1
Hypothetical protein.
       0.773
ABX23186.1
Hypothetical protein; COG: COG4166 ABC-type oligopeptide transport system, periplasmic component.
       0.773
ABX23187.1
Hypothetical protein; KEGG: bpm:BURPS1710b_2148 4.9e-05 JmjC domain protein K00476; COG: KOG2130 Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain; Psort location: Cytoplasmic, score:8.96.
       0.727
rplN
Hypothetical protein; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.
  
 
   0.609
rpsK
Hypothetical protein; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
  
   0.596
rplD
Hypothetical protein; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.
   
 
 0.595
rpsC
Hypothetical protein; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.
   
   0.579
Your Current Organism:
Salmonella enterica arizonae
NCBI taxonomy Id: 41514
Other names: S. enterica subsp. arizonae serovar 62:z4,z23:-, Salmonella enterica IIIa 62:z4,z23:-, Salmonella enterica serovar IIIa 62:z4,z23:-, Salmonella enterica subsp. arizonae serovar 62:z4,z23:-
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.