STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABX23221.1COG: COG1538 Outer membrane protein; Psort location: OuterMembrane, score:10.00. (479 aa)    
Predicted Functional Partners:
ABX23219.1
Hypothetical protein; KEGG: eci:UTI89_C0735 0.0047 tolA; membrane spanning protein TolA K03646; COG: COG1566 Multidrug resistance efflux pump; Psort location: CytoplasmicMembrane, score:8.02.
 
 
 0.974
ABX23220.1
COG: COG1289 Predicted membrane protein; Psort location: CytoplasmicMembrane, score:10.00.
 
   
 0.954
macB
Hypothetical protein; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
 
 0.896
ABX20106.1
Hypothetical protein; COG: COG1566 Multidrug resistance efflux pump.
 
 
 0.831
ABX23218.1
Hypothetical protein; COG: NOG29453 non supervised orthologous group; Psort location: CytoplasmicMembrane, score:9.46.
     
 0.789
mdtA
COG: COG0845 Membrane-fusion protein; Psort location: CytoplasmicMembrane, score:8.02; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.674
ABX24022.1
COG: COG0845 Membrane-fusion protein; Psort location: CytoplasmicMembrane, score:8.60; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.667
ABX22318.1
Hypothetical protein; KEGG: saz:Sama_0326 0.0047 phosphopantothenoylcysteine decarboxylase, phosphopantothenate--cysteine ligase K01598:K01922; COG: COG0845 Membrane-fusion protein; Psort location: CytoplasmicMembrane, score:8.60.
 
 
 0.651
ybhG
COG: COG0845 Membrane-fusion protein; Psort location: CytoplasmicMembrane, score:8.60.
 
 
 0.617
ABX22319.1
Hypothetical protein; KEGG: eci:UTI89_C2351 2.1e-108 yegO; hypothetical protein YegO K07789; COG: COG0841 Cation/multidrug efflux pump; Psort location: CytoplasmicMembrane, score:10.00.
 
 0.604
Your Current Organism:
Salmonella enterica arizonae
NCBI taxonomy Id: 41514
Other names: S. enterica subsp. arizonae serovar 62:z4,z23:-, Salmonella enterica IIIa 62:z4,z23:-, Salmonella enterica serovar IIIa 62:z4,z23:-, Salmonella enterica subsp. arizonae serovar 62:z4,z23:-
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