Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ABX22232.1 | pepE | SARI_02369 | SARI_03466 | Hypothetical protein; COG: COG0668 Small-conductance mechanosensitive channel; Psort location: CytoplasmicMembrane, score:10.00. | Hypothetical protein; Hydrolyzes dipeptides containing N-terminal aspartate residues. May play a role in allowing the cell to use peptide aspartate to spare carbon otherwise required for the synthesis of the aspartate family of amino acids. | 0.501 |
| ABX22552.1 | pepE | SARI_02696 | SARI_03466 | Hypothetical protein; KEGG: stm:STM0316 1.1e-253 pepD; aminoacyl-histidine dipeptidase K01270; COG: COG2195 Di- and tripeptidases; Psort location: Cytoplasmic, score:8.96. | Hypothetical protein; Hydrolyzes dipeptides containing N-terminal aspartate residues. May play a role in allowing the cell to use peptide aspartate to spare carbon otherwise required for the synthesis of the aspartate family of amino acids. | 0.415 |
| ABX22903.1 | pepE | SARI_03063 | SARI_03466 | Hypothetical protein; Catalyzes the hydrolytic cleavage of a subset of L- isoaspartyl (L-beta-aspartyl) dipeptides. Used to degrade proteins damaged by L-isoaspartyl residues formation. | Hypothetical protein; Hydrolyzes dipeptides containing N-terminal aspartate residues. May play a role in allowing the cell to use peptide aspartate to spare carbon otherwise required for the synthesis of the aspartate family of amino acids. | 0.830 |
| ABX23293.1 | ABX23294.1 | SARI_03464 | SARI_03465 | Hypothetical protein; KEGG: sec:SC4072 3.0e-146 yjbC; putative pseudouridine synthase K06182; COG: COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases; Belongs to the pseudouridine synthase RsuA family. | COG: COG3122 Uncharacterized protein conserved in bacteria; Psort location: Cytoplasmic, score:8.96. | 0.780 |
| ABX23293.1 | pepE | SARI_03464 | SARI_03466 | Hypothetical protein; KEGG: sec:SC4072 3.0e-146 yjbC; putative pseudouridine synthase K06182; COG: COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases; Belongs to the pseudouridine synthase RsuA family. | Hypothetical protein; Hydrolyzes dipeptides containing N-terminal aspartate residues. May play a role in allowing the cell to use peptide aspartate to spare carbon otherwise required for the synthesis of the aspartate family of amino acids. | 0.478 |
| ABX23294.1 | ABX23293.1 | SARI_03465 | SARI_03464 | COG: COG3122 Uncharacterized protein conserved in bacteria; Psort location: Cytoplasmic, score:8.96. | Hypothetical protein; KEGG: sec:SC4072 3.0e-146 yjbC; putative pseudouridine synthase K06182; COG: COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases; Belongs to the pseudouridine synthase RsuA family. | 0.780 |
| ABX23294.1 | pepE | SARI_03465 | SARI_03466 | COG: COG3122 Uncharacterized protein conserved in bacteria; Psort location: Cytoplasmic, score:8.96. | Hypothetical protein; Hydrolyzes dipeptides containing N-terminal aspartate residues. May play a role in allowing the cell to use peptide aspartate to spare carbon otherwise required for the synthesis of the aspartate family of amino acids. | 0.478 |
| pepE | ABX22232.1 | SARI_03466 | SARI_02369 | Hypothetical protein; Hydrolyzes dipeptides containing N-terminal aspartate residues. May play a role in allowing the cell to use peptide aspartate to spare carbon otherwise required for the synthesis of the aspartate family of amino acids. | Hypothetical protein; COG: COG0668 Small-conductance mechanosensitive channel; Psort location: CytoplasmicMembrane, score:10.00. | 0.501 |
| pepE | ABX22552.1 | SARI_03466 | SARI_02696 | Hypothetical protein; Hydrolyzes dipeptides containing N-terminal aspartate residues. May play a role in allowing the cell to use peptide aspartate to spare carbon otherwise required for the synthesis of the aspartate family of amino acids. | Hypothetical protein; KEGG: stm:STM0316 1.1e-253 pepD; aminoacyl-histidine dipeptidase K01270; COG: COG2195 Di- and tripeptidases; Psort location: Cytoplasmic, score:8.96. | 0.415 |
| pepE | ABX22903.1 | SARI_03466 | SARI_03063 | Hypothetical protein; Hydrolyzes dipeptides containing N-terminal aspartate residues. May play a role in allowing the cell to use peptide aspartate to spare carbon otherwise required for the synthesis of the aspartate family of amino acids. | Hypothetical protein; Catalyzes the hydrolytic cleavage of a subset of L- isoaspartyl (L-beta-aspartyl) dipeptides. Used to degrade proteins damaged by L-isoaspartyl residues formation. | 0.830 |
| pepE | ABX23293.1 | SARI_03466 | SARI_03464 | Hypothetical protein; Hydrolyzes dipeptides containing N-terminal aspartate residues. May play a role in allowing the cell to use peptide aspartate to spare carbon otherwise required for the synthesis of the aspartate family of amino acids. | Hypothetical protein; KEGG: sec:SC4072 3.0e-146 yjbC; putative pseudouridine synthase K06182; COG: COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases; Belongs to the pseudouridine synthase RsuA family. | 0.478 |
| pepE | ABX23294.1 | SARI_03466 | SARI_03465 | Hypothetical protein; Hydrolyzes dipeptides containing N-terminal aspartate residues. May play a role in allowing the cell to use peptide aspartate to spare carbon otherwise required for the synthesis of the aspartate family of amino acids. | COG: COG3122 Uncharacterized protein conserved in bacteria; Psort location: Cytoplasmic, score:8.96. | 0.478 |
| pepE | pepT | SARI_03466 | SARI_01762 | Hypothetical protein; Hydrolyzes dipeptides containing N-terminal aspartate residues. May play a role in allowing the cell to use peptide aspartate to spare carbon otherwise required for the synthesis of the aspartate family of amino acids. | Hypothetical protein; Cleaves the N-terminal amino acid of tripeptides. Belongs to the peptidase M20B family. | 0.402 |
| pepE | rhaT | SARI_03466 | SARI_03596 | Hypothetical protein; Hydrolyzes dipeptides containing N-terminal aspartate residues. May play a role in allowing the cell to use peptide aspartate to spare carbon otherwise required for the synthesis of the aspartate family of amino acids. | Hypothetical protein; Uptake of L-rhamnose across the boundary membrane with the concomitant transport of protons into the cell (symport system). Belongs to the L-rhamnose transporter (TC 2.A.7.6) family. | 0.537 |
| pepE | rihA | SARI_03466 | SARI_02282 | Hypothetical protein; Hydrolyzes dipeptides containing N-terminal aspartate residues. May play a role in allowing the cell to use peptide aspartate to spare carbon otherwise required for the synthesis of the aspartate family of amino acids. | Hypothetical protein; Hydrolyzes cytidine or uridine to ribose and cytosine or uracil, respectively. | 0.476 |
| pepT | pepE | SARI_01762 | SARI_03466 | Hypothetical protein; Cleaves the N-terminal amino acid of tripeptides. Belongs to the peptidase M20B family. | Hypothetical protein; Hydrolyzes dipeptides containing N-terminal aspartate residues. May play a role in allowing the cell to use peptide aspartate to spare carbon otherwise required for the synthesis of the aspartate family of amino acids. | 0.402 |
| rhaT | pepE | SARI_03596 | SARI_03466 | Hypothetical protein; Uptake of L-rhamnose across the boundary membrane with the concomitant transport of protons into the cell (symport system). Belongs to the L-rhamnose transporter (TC 2.A.7.6) family. | Hypothetical protein; Hydrolyzes dipeptides containing N-terminal aspartate residues. May play a role in allowing the cell to use peptide aspartate to spare carbon otherwise required for the synthesis of the aspartate family of amino acids. | 0.537 |
| rihA | pepE | SARI_02282 | SARI_03466 | Hypothetical protein; Hydrolyzes cytidine or uridine to ribose and cytosine or uracil, respectively. | Hypothetical protein; Hydrolyzes dipeptides containing N-terminal aspartate residues. May play a role in allowing the cell to use peptide aspartate to spare carbon otherwise required for the synthesis of the aspartate family of amino acids. | 0.476 |