STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fdhEHypothetical protein; Necessary for formate dehydrogenase activity. Belongs to the FdhE family. (309 aa)    
Predicted Functional Partners:
ABX23443.1
Hypothetical protein; KEGG: sec:SC3925 1.5e-114 fdoI; formate dehydrogenase, cytochrome b556 (FDO) subunit K00127; COG: COG2864 Cytochrome b subunit of formate dehydrogenase; Psort location: CytoplasmicMembrane, score:10.00.
 
  
 0.984
ABX23442.1
Hypothetical protein; The beta chain is an electron transfer unit containing 4 cysteine clusters involved in the formation of iron-sulfur centers.
 
  
 0.963
ABX21298.1
Hypothetical protein; KEGG: stm:STM1568 4.7e-118 fdnI; formate dehydrogenase, cytochrome b556 subunit (formate dehydrogenase gamma subunit) K08350; COG: COG2864 Cytochrome b subunit of formate dehydrogenase; Psort location: CytoplasmicMembrane, score:10.00.
 
  
 0.874
fdhD
Hypothetical protein; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family.
 
  
 0.872
ABX21297.1
Hypothetical protein; The beta chain is an electron transfer unit containing 4 cysteine clusters involved in the formation of iron-sulfur centers.
 
  
 0.812
ABX23760.1
Hypothetical protein; KEGG: eci:UTI89_C4132 1.1e-281 selB; selenocysteine-specific elongation factor K03833; COG: COG3276 Selenocysteine-specific translation elongation factor; Psort location: Cytoplasmic, score:9.97.
 
   
 0.809
selA
Hypothetical protein; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis; Belongs to the SelA family.
 
   
 0.768
ABX22040.1
Hypothetical protein; COG: COG2005 N-terminal domain of molybdenum-binding protein.
 
   
 0.705
ABX21761.1
Hypothetical protein; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family.
  
   
 0.684
ABX20263.1
Hypothetical protein; KEGG: spz:M5005_Spy_1664 0.0080 PTS system, mannitol (cryptic)-specific IIA component K00890; COG: COG3711 Transcriptional antiterminator; Psort location: Cytoplasmic, score:8.96.
  
     0.628
Your Current Organism:
Salmonella enterica arizonae
NCBI taxonomy Id: 41514
Other names: S. enterica subsp. arizonae serovar 62:z4,z23:-, Salmonella enterica IIIa 62:z4,z23:-, Salmonella enterica serovar IIIa 62:z4,z23:-, Salmonella enterica subsp. arizonae serovar 62:z4,z23:-
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