Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABX23874.1Hypothetical protein; KEGG: eco:b3440 5.8e-175 yhhX; predicted oxidoreductase with NAD(P)-binding Rossmann-fold domain; COG: COG0673 Predicted dehydrogenases and related proteins; Psort location: Cytoplasmic, score:8.96. (373 aa)    
Predicted Functional Partners:
ABX21713.1
Hypothetical protein; KEGG: lpl:lp_0813 2.0e-30 oxidoreductase (putative) K03810; COG: COG0673 Predicted dehydrogenases and related proteins.
  
     0.657
lysS
Hypothetical protein; KEGG: stm:STM3040 7.6e-269 lysS; lysine tRNA synthetase, constitutive K04567; COG: COG1190 Lysyl-tRNA synthetase (class II); Psort location: Cytoplasmic, score:10.00; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.521
ABX23875.1
Hypothetical protein; KEGG: shn:Shewana3_3385 2.6e-13 hypoxanthine phosphoribosyltransferase K00760; COG: COG1741 Pirin-related protein; Belongs to the pirin family.
       0.499
galK
Hypothetical protein; Catalyzes the transfer of the gamma-phosphate of ATP to D- galactose to form alpha-D-galactose-1-phosphate (Gal-1-P). Belongs to the GHMP kinase family. GalK subfamily.
 
 
 0.435
Your Current Organism:
Salmonella enterica arizonae
NCBI taxonomy Id: 41514
Other names: S. enterica subsp. arizonae serovar 62:z4,z23:-, Salmonella enterica IIIa 62:z4,z23:-, Salmonella enterica serovar IIIa 62:z4,z23:-, Salmonella enterica subsp. arizonae serovar 62:z4,z23:-
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