Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABX24251.1Hypothetical protein; KEGG: eci:UTI89_C3417 8.5e-206 hybB; probable Ni/Fe-hydrogenase 2 B-type cytochrome subunit K00178; COG: COG5557 Polysulphide reductase; Psort location: CytoplasmicMembrane, score:10.00. (397 aa)    
Predicted Functional Partners:
ABX24250.1
Hypothetical protein; KEGG: eci:UTI89_C3418 6.3e-178 hybA; hydrogenase-2 operon protein HybA precursor K00396; COG: COG0437 Fe-S-cluster-containing hydrogenase components 1; Psort location: Periplasmic, score:10.00.
 
 0.998
ABX24252.1
Hypothetical protein; KEGG: sec:SC3088 0. hybC; hydrogenase-2, large subunit K06281; COG: COG0374 Ni,Fe-hydrogenase I large subunit; Psort location: Periplasmic, score:9.44; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.
 
  
 0.989
ABX24249.1
Hypothetical protein; KEGG: sty:STY3321 2.8e-207 hyb0; hydrogenase small chain K06282; COG: COG1740 Ni,Fe-hydrogenase I small subunit; Psort location: Periplasmic, score:9.76.
 
  
 0.985
ABX24254.1
Hypothetical protein; COG: NOG08099 non supervised orthologous group; Psort location: Cytoplasmic, score:8.96.
 
  
 0.980
ABX24253.1
Hypothetical protein; KEGG: spt:SPA3014 1.2e-80 hybD; hydrogenase-2 component protein K08567; COG: COG0680 Ni,Fe-hydrogenase maturation factor; Psort location: Cytoplasmic, score:8.96.
 
  
 0.959
hybF
Hypothetical protein; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.
  
  
 0.876
ABX21297.1
Hypothetical protein; The beta chain is an electron transfer unit containing 4 cysteine clusters involved in the formation of iron-sulfur centers.
  
 
 0.788
tuf1
Hypothetical protein; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
  
 
 0.776
ABX23970.1
KEGG: sec:SC3379 1.1e-217 tufB; protein chain elongation factor EF-Tu (duplicate of TufA) K02358; COG: COG0050 GTPases - translation elongation factors; Psort location: Cytoplasmic, score:9.97.
  
 
 0.776
ABX24256.1
Hypothetical protein; COG: COG0298 Hydrogenase maturation factor; Psort location: Cytoplasmic, score:8.96.
  
  
 0.767
Your Current Organism:
Salmonella enterica arizonae
NCBI taxonomy Id: 41514
Other names: S. enterica subsp. arizonae serovar 62:z4,z23:-, Salmonella enterica IIIa 62:z4,z23:-, Salmonella enterica serovar IIIa 62:z4,z23:-, Salmonella enterica subsp. arizonae serovar 62:z4,z23:-
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