Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Hbut_0827 | Hbut_0896 | Hbut_0827 | Hbut_0896 | Conserved archaeal protein. | DNA polymerase III. | 0.730 |
Hbut_0827 | Hbut_0916 | Hbut_0827 | Hbut_0916 | Conserved archaeal protein. | DNA topoisomerase I. | 0.896 |
Hbut_0827 | Hbut_1638 | Hbut_0827 | Hbut_1638 | Conserved archaeal protein. | DNA repair and recombination protein radB. | 0.839 |
Hbut_0827 | fen | Hbut_0827 | Hbut_1366 | Conserved archaeal protein. | Endonuclease; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. Binds the unpaired 3'-DNA end and kinks the DNA to facilitate 5' cleavage specificity. Cleaves one nucleotide into the double-stranded DNA from the junction in flap DNA, leaving a nick for ligation. Also involved in the base excision repair (BER) pathway. Acts as [...] | 0.758 |
Hbut_0827 | lig | Hbut_0827 | Hbut_0421 | Conserved archaeal protein. | ATP-dependent DNA ligase; DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair. Can use ATP, ADP and GTP, but not CTP, TTP or NAD(+); Belongs to the ATP-dependent DNA ligase family. | 0.743 |
Hbut_0827 | mre11 | Hbut_0827 | Hbut_1192 | Conserved archaeal protein. | Predicted DNA repair exonuclease; Part of the Rad50/Mre11 complex, which is involved in the early steps of DNA double-strand break (DSB) repair. The complex may facilitate opening of the processed DNA ends to aid in the recruitment of HerA and NurA. Mre11 binds to DSB ends and has both double-stranded 3'-5' exonuclease activity and single-stranded endonuclease activity. Belongs to the MRE11/RAD32 family. | 0.867 |
Hbut_0827 | rad50 | Hbut_0827 | Hbut_1193 | Conserved archaeal protein. | Predicted Rad50; Part of the Rad50/Mre11 complex, which is involved in the early steps of DNA double-strand break (DSB) repair. The complex may facilitate opening of the processed DNA ends to aid in the recruitment of HerA and NurA. Rad50 controls the balance between DNA end bridging and DNA resection via ATP-dependent structural rearrangements of the Rad50/Mre11 complex; Belongs to the SMC family. RAD50 subfamily. | 0.794 |
Hbut_0827 | radA | Hbut_0827 | Hbut_0967 | Conserved archaeal protein. | DNA repair and recombination protein; Involved in DNA repair and in homologous recombination. Binds and assemble on single-stranded DNA to form a nucleoprotein filament. Hydrolyzes ATP in a ssDNA-dependent manner and promotes DNA strand exchange between homologous DNA molecules. | 0.888 |
Hbut_0827 | rfcL | Hbut_0827 | Hbut_0906 | Conserved archaeal protein. | Replication factor C large subunit; Part of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA; Belongs to the activator 1 small subunits family. RfcL subfamily. | 0.866 |
Hbut_0896 | Hbut_0827 | Hbut_0896 | Hbut_0827 | DNA polymerase III. | Conserved archaeal protein. | 0.730 |
Hbut_0896 | Hbut_0916 | Hbut_0896 | Hbut_0916 | DNA polymerase III. | DNA topoisomerase I. | 0.566 |
Hbut_0896 | Hbut_1638 | Hbut_0896 | Hbut_1638 | DNA polymerase III. | DNA repair and recombination protein radB. | 0.622 |
Hbut_0896 | fen | Hbut_0896 | Hbut_1366 | DNA polymerase III. | Endonuclease; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. Binds the unpaired 3'-DNA end and kinks the DNA to facilitate 5' cleavage specificity. Cleaves one nucleotide into the double-stranded DNA from the junction in flap DNA, leaving a nick for ligation. Also involved in the base excision repair (BER) pathway. Acts as [...] | 0.885 |
Hbut_0896 | lig | Hbut_0896 | Hbut_0421 | DNA polymerase III. | ATP-dependent DNA ligase; DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair. Can use ATP, ADP and GTP, but not CTP, TTP or NAD(+); Belongs to the ATP-dependent DNA ligase family. | 0.768 |
Hbut_0896 | mre11 | Hbut_0896 | Hbut_1192 | DNA polymerase III. | Predicted DNA repair exonuclease; Part of the Rad50/Mre11 complex, which is involved in the early steps of DNA double-strand break (DSB) repair. The complex may facilitate opening of the processed DNA ends to aid in the recruitment of HerA and NurA. Mre11 binds to DSB ends and has both double-stranded 3'-5' exonuclease activity and single-stranded endonuclease activity. Belongs to the MRE11/RAD32 family. | 0.670 |
Hbut_0896 | rad50 | Hbut_0896 | Hbut_1193 | DNA polymerase III. | Predicted Rad50; Part of the Rad50/Mre11 complex, which is involved in the early steps of DNA double-strand break (DSB) repair. The complex may facilitate opening of the processed DNA ends to aid in the recruitment of HerA and NurA. Rad50 controls the balance between DNA end bridging and DNA resection via ATP-dependent structural rearrangements of the Rad50/Mre11 complex; Belongs to the SMC family. RAD50 subfamily. | 0.710 |
Hbut_0896 | radA | Hbut_0896 | Hbut_0967 | DNA polymerase III. | DNA repair and recombination protein; Involved in DNA repair and in homologous recombination. Binds and assemble on single-stranded DNA to form a nucleoprotein filament. Hydrolyzes ATP in a ssDNA-dependent manner and promotes DNA strand exchange between homologous DNA molecules. | 0.655 |
Hbut_0896 | rfcL | Hbut_0896 | Hbut_0906 | DNA polymerase III. | Replication factor C large subunit; Part of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA; Belongs to the activator 1 small subunits family. RfcL subfamily. | 0.792 |
Hbut_0916 | Hbut_0827 | Hbut_0916 | Hbut_0827 | DNA topoisomerase I. | Conserved archaeal protein. | 0.896 |
Hbut_0916 | Hbut_0896 | Hbut_0916 | Hbut_0896 | DNA topoisomerase I. | DNA polymerase III. | 0.566 |
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