STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCZ55322.1ABC-2 type transport system ATP-binding protein. (568 aa)    
Predicted Functional Partners:
SCZ55328.1
ABC-2 type transport system permease protein.
 
  0.995
SCZ55335.1
ABC-2 type transport system permease protein.
 
  0.993
SCZ55618.1
ABC-2 type transport system permease protein.
 
  0.982
SCZ55622.1
ABC-2 type transport system permease protein.
 
  0.981
SCZ55316.1
HlyD family secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
    0.939
SCZ59328.1
ABC-2 type transport system permease protein.
 
  0.853
SCZ53226.1
ABC-2 type transport system permease protein.
 
 0.847
SCZ63122.1
ABC-2 type transport system permease protein.
 
  0.831
SCZ55608.1
HlyD family secretion protein.
    0.795
SCZ59336.1
HlyD family secretion protein.
    0.697
Your Current Organism:
Thiohalomonas denitrificans
NCBI taxonomy Id: 415747
Other names: DSM 15841, T. denitrificans, Thiohalomonas denitrificans Sorokin et al. 2007, UNIQEM U222, halophilic bacterium HLD 1, halophilic bacterium HLD 16, strain HLD 2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.