STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCZ60302.1tRNA (mo5U34)-methyltransferase. (265 aa)    
Predicted Functional Partners:
SCZ60311.1
Hypothetical protein.
 
     0.917
SCZ56197.1
B12-binding domain/radical SAM domain protein, rhizo-twelve system.
  
 
 0.830
SCZ56182.1
Spore maturation protein CgeB.
 
     0.790
SCZ56191.1
Spore maturation protein CgeB.
 
     0.790
SCZ56194.1
Spore maturation protein CgeB.
 
     0.789
SCZ56202.1
CDP-paratose 2-epimerase.
 
  
  0.787
SCZ56187.1
Glycosyltransferase involved in cell wall bisynthesis.
 
     0.786
SCZ56189.1
Hypothetical protein.
 
     0.783
SCZ56205.1
dTDP-L-rhamnose 4-epimerase.
  
  
  0.778
SCZ60307.1
Probable phosphoglycerate mutase.
 
     0.773
Your Current Organism:
Thiohalomonas denitrificans
NCBI taxonomy Id: 415747
Other names: DSM 15841, T. denitrificans, Thiohalomonas denitrificans Sorokin et al. 2007, UNIQEM U222, halophilic bacterium HLD 1, halophilic bacterium HLD 16, strain HLD 2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.