STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCZ60311.1Hypothetical protein. (304 aa)    
Predicted Functional Partners:
SCZ56202.1
CDP-paratose 2-epimerase.
 
     0.976
SCZ60302.1
tRNA (mo5U34)-methyltransferase.
 
     0.917
SCZ60307.1
Probable phosphoglycerate mutase.
 
     0.912
SCZ60316.1
Myo-inositol-1-phosphate synthase.
 
     0.842
SCZ56205.1
dTDP-L-rhamnose 4-epimerase.
 
     0.835
SCZ56187.1
Glycosyltransferase involved in cell wall bisynthesis.
 
    0.793
SCZ56182.1
Spore maturation protein CgeB.
 
     0.791
SCZ56191.1
Spore maturation protein CgeB.
 
     0.791
SCZ56194.1
Spore maturation protein CgeB.
 
     0.791
SCZ56189.1
Hypothetical protein.
 
     0.773
Your Current Organism:
Thiohalomonas denitrificans
NCBI taxonomy Id: 415747
Other names: DSM 15841, T. denitrificans, Thiohalomonas denitrificans Sorokin et al. 2007, UNIQEM U222, halophilic bacterium HLD 1, halophilic bacterium HLD 16, strain HLD 2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.