STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHO71839.1Hypothetical protein. (190 aa)    
Predicted Functional Partners:
SHO71838.1
Chromosome partitioning protein, ParB family; Belongs to the ParB family.
       0.833
SHO71837.1
Chromosome partitioning protein.
       0.829
SHO71841.1
Signal peptidase I; Belongs to the peptidase S26 family.
 
     0.732
SHO72111.1
Protein of unknown function.
  
     0.719
SHO71849.1
Tetratricopeptide repeat-containing protein.
  
     0.715
SHO73112.1
OstA-like protein.
  
    0.696
SHO73900.1
LPS assembly outer membrane protein LptD (organic solvent tolerance protein OstA).
  
    0.674
dapB
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.
       0.673
SHO71925.1
Lipopolysaccharide-assembly.
  
    0.665
SHO71842.1
WbqC-like protein family protein.
 
     0.660
Your Current Organism:
Flavobacterium cucumis
NCBI taxonomy Id: 416016
Other names: DSM 18830, F. cucumis, Flavobacterium cucumis Weon et al. 2007, KACC 11732, strain R2A45-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.