Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHO71916.1 | SHO72129.1 | SAMN05443547_0235 | SAMN05443547_0455 | Glycine/D-amino acid oxidase. | Sulfur carrier protein ThiS. | 0.632 |
SHO71916.1 | SHO72135.1 | SAMN05443547_0235 | SAMN05443547_0461 | Glycine/D-amino acid oxidase. | Tyrosine lyase ThiH. | 0.907 |
SHO71916.1 | SHO72136.1 | SAMN05443547_0235 | SAMN05443547_0462 | Glycine/D-amino acid oxidase. | Adenylyltransferase and sulfurtransferase. | 0.583 |
SHO71916.1 | thiG | SAMN05443547_0235 | SAMN05443547_0460 | Glycine/D-amino acid oxidase. | Thiazole-phosphate synthase; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S. | 0.932 |
SHO72129.1 | SHO71916.1 | SAMN05443547_0455 | SAMN05443547_0235 | Sulfur carrier protein ThiS. | Glycine/D-amino acid oxidase. | 0.632 |
SHO72129.1 | SHO72131.1 | SAMN05443547_0455 | SAMN05443547_0457 | Sulfur carrier protein ThiS. | Thiamine-phosphate pyrophosphorylase. | 0.975 |
SHO72129.1 | SHO72132.1 | SAMN05443547_0455 | SAMN05443547_0458 | Sulfur carrier protein ThiS. | Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase. | 0.977 |
SHO72129.1 | SHO72135.1 | SAMN05443547_0455 | SAMN05443547_0461 | Sulfur carrier protein ThiS. | Tyrosine lyase ThiH. | 0.943 |
SHO72129.1 | SHO72136.1 | SAMN05443547_0455 | SAMN05443547_0462 | Sulfur carrier protein ThiS. | Adenylyltransferase and sulfurtransferase. | 0.988 |
SHO72129.1 | thiC | SAMN05443547_0455 | SAMN05443547_0456 | Sulfur carrier protein ThiS. | Hydroxymethylpyrimidine synthase; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction. Belongs to the ThiC family. | 0.934 |
SHO72129.1 | thiE | SAMN05443547_0455 | SAMN05443547_0459 | Sulfur carrier protein ThiS. | Thiamine-phosphate diphosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family. | 0.953 |
SHO72129.1 | thiG | SAMN05443547_0455 | SAMN05443547_0460 | Sulfur carrier protein ThiS. | Thiazole-phosphate synthase; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S. | 0.998 |
SHO72131.1 | SHO72129.1 | SAMN05443547_0457 | SAMN05443547_0455 | Thiamine-phosphate pyrophosphorylase. | Sulfur carrier protein ThiS. | 0.975 |
SHO72131.1 | SHO72132.1 | SAMN05443547_0457 | SAMN05443547_0458 | Thiamine-phosphate pyrophosphorylase. | Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase. | 0.999 |
SHO72131.1 | SHO72135.1 | SAMN05443547_0457 | SAMN05443547_0461 | Thiamine-phosphate pyrophosphorylase. | Tyrosine lyase ThiH. | 0.974 |
SHO72131.1 | SHO72136.1 | SAMN05443547_0457 | SAMN05443547_0462 | Thiamine-phosphate pyrophosphorylase. | Adenylyltransferase and sulfurtransferase. | 0.918 |
SHO72131.1 | thiC | SAMN05443547_0457 | SAMN05443547_0456 | Thiamine-phosphate pyrophosphorylase. | Hydroxymethylpyrimidine synthase; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction. Belongs to the ThiC family. | 0.979 |
SHO72131.1 | thiE | SAMN05443547_0457 | SAMN05443547_0459 | Thiamine-phosphate pyrophosphorylase. | Thiamine-phosphate diphosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family. | 0.998 |
SHO72131.1 | thiG | SAMN05443547_0457 | SAMN05443547_0460 | Thiamine-phosphate pyrophosphorylase. | Thiazole-phosphate synthase; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S. | 0.993 |
SHO72132.1 | SHO72129.1 | SAMN05443547_0458 | SAMN05443547_0455 | Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase. | Sulfur carrier protein ThiS. | 0.977 |
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