Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHO72183.1 | SHO72184.1 | SAMN05443547_0510 | SAMN05443547_0511 | methylated-DNA-protein-cysteine methyltransferase related protein. | LysE type translocator. | 0.832 |
SHO72183.1 | SHO72186.1 | SAMN05443547_0510 | SAMN05443547_0513 | methylated-DNA-protein-cysteine methyltransferase related protein. | UDP-2,3-diacylglucosamine pyrophosphatase LpxH. | 0.514 |
SHO72183.1 | SHO72187.1 | SAMN05443547_0510 | SAMN05443547_0514 | methylated-DNA-protein-cysteine methyltransferase related protein. | Conserved hypothetical protein. | 0.565 |
SHO72183.1 | trmB | SAMN05443547_0510 | SAMN05443547_0512 | methylated-DNA-protein-cysteine methyltransferase related protein. | tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. | 0.806 |
SHO72184.1 | SHO72183.1 | SAMN05443547_0511 | SAMN05443547_0510 | LysE type translocator. | methylated-DNA-protein-cysteine methyltransferase related protein. | 0.832 |
SHO72184.1 | SHO72186.1 | SAMN05443547_0511 | SAMN05443547_0513 | LysE type translocator. | UDP-2,3-diacylglucosamine pyrophosphatase LpxH. | 0.514 |
SHO72184.1 | SHO72187.1 | SAMN05443547_0511 | SAMN05443547_0514 | LysE type translocator. | Conserved hypothetical protein. | 0.561 |
SHO72184.1 | trmB | SAMN05443547_0511 | SAMN05443547_0512 | LysE type translocator. | tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. | 0.804 |
SHO72186.1 | SHO72183.1 | SAMN05443547_0513 | SAMN05443547_0510 | UDP-2,3-diacylglucosamine pyrophosphatase LpxH. | methylated-DNA-protein-cysteine methyltransferase related protein. | 0.514 |
SHO72186.1 | SHO72184.1 | SAMN05443547_0513 | SAMN05443547_0511 | UDP-2,3-diacylglucosamine pyrophosphatase LpxH. | LysE type translocator. | 0.514 |
SHO72186.1 | SHO72187.1 | SAMN05443547_0513 | SAMN05443547_0514 | UDP-2,3-diacylglucosamine pyrophosphatase LpxH. | Conserved hypothetical protein. | 0.804 |
SHO72186.1 | trmB | SAMN05443547_0513 | SAMN05443547_0512 | UDP-2,3-diacylglucosamine pyrophosphatase LpxH. | tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. | 0.539 |
SHO72187.1 | SHO72183.1 | SAMN05443547_0514 | SAMN05443547_0510 | Conserved hypothetical protein. | methylated-DNA-protein-cysteine methyltransferase related protein. | 0.565 |
SHO72187.1 | SHO72184.1 | SAMN05443547_0514 | SAMN05443547_0511 | Conserved hypothetical protein. | LysE type translocator. | 0.561 |
SHO72187.1 | SHO72186.1 | SAMN05443547_0514 | SAMN05443547_0513 | Conserved hypothetical protein. | UDP-2,3-diacylglucosamine pyrophosphatase LpxH. | 0.804 |
SHO72187.1 | trmB | SAMN05443547_0514 | SAMN05443547_0512 | Conserved hypothetical protein. | tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. | 0.586 |
SHO72297.1 | trmB | SAMN05443547_0628 | SAMN05443547_0512 | seryl-tRNA synthetase. | tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. | 0.734 |
SHO74288.1 | rpmD | SAMN05443547_2678 | SAMN05443547_1688 | 16S rRNA (cytosine967-C5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | LSU ribosomal protein L30P. | 0.813 |
SHO74288.1 | trmB | SAMN05443547_2678 | SAMN05443547_0512 | 16S rRNA (cytosine967-C5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. | 0.621 |
SHO74288.1 | truB | SAMN05443547_2678 | SAMN05443547_0551 | 16S rRNA (cytosine967-C5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. | 0.447 |
page 1 of 3