STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHO72193.1Por secretion system C-terminal sorting domain-containing protein. (113 aa)    
Predicted Functional Partners:
SHO73648.1
Family of unknown function.
  
     0.670
SHO72425.1
Hypothetical protein.
  
     0.660
SHO72066.1
Type IX secretion system membrane protein, PorP/SprF family.
  
     0.632
SHO72533.1
DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains.
  
     0.619
SHO72535.1
Putative DNA-binding domain-containing protein.
  
     0.607
SHO72194.1
Por secretion system C-terminal sorting domain-containing protein.
 
    
0.579
SHO72192.1
Hypothetical protein.
       0.561
SHO72332.1
Protein involved in gliding motility SprE.
  
     0.534
SHO73166.1
Protein involved in gliding motility GldI.
  
     0.530
SHO72470.1
Periplasmic chaperone for outer membrane proteins Skp.
  
     0.528
Your Current Organism:
Flavobacterium cucumis
NCBI taxonomy Id: 416016
Other names: DSM 18830, F. cucumis, Flavobacterium cucumis Weon et al. 2007, KACC 11732, strain R2A45-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.