STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHO72211.1Caspase domain-containing protein. (281 aa)    
Predicted Functional Partners:
SHO72212.1
V8-like Glu-specific endopeptidase; Belongs to the peptidase S1B family.
 
    0.771
SHO72987.1
PAS domain S-box-containing protein.
 
 
 0.733
SHO73669.1
PAS domain S-box-containing protein.
 
 
 0.693
mnmG
tRNA uridine 5-carboxymethylaminomethyl modification enzyme; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family.
   
   0.596
dnaK
Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
   
 
 0.566
SHO73827.1
Nitrous oxidase accessory protein.
  
 
 0.549
SHO71734.1
Signal transduction histidine kinase.
  
 0.544
SHO72213.1
Hypothetical protein.
       0.523
SHO73922.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
 
 0.513
SHO71759.1
Do/DeqQ family serine protease.
    
 0.479
Your Current Organism:
Flavobacterium cucumis
NCBI taxonomy Id: 416016
Other names: DSM 18830, F. cucumis, Flavobacterium cucumis Weon et al. 2007, KACC 11732, strain R2A45-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.