Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHO72277.1 | SHO72280.1 | SAMN05443547_0605 | SAMN05443547_0608 | Starch synthase. | Hypothetical protein. | 0.620 |
SHO72277.1 | SHO72281.1 | SAMN05443547_0605 | SAMN05443547_0609 | Starch synthase. | Hypothetical protein. | 0.480 |
SHO72277.1 | SHO72283.1 | SAMN05443547_0605 | SAMN05443547_0611 | Starch synthase. | Protein of unknown function, DUF547. | 0.479 |
SHO72277.1 | SHO72724.1 | SAMN05443547_0605 | SAMN05443547_1063 | Starch synthase. | Por secretion system C-terminal sorting domain-containing protein; Belongs to the glycosyl hydrolase 13 family. | 0.979 |
SHO72277.1 | SHO72733.1 | SAMN05443547_0605 | SAMN05443547_1072 | Starch synthase. | Glycosidase; Belongs to the glycosyl hydrolase 13 family. | 0.741 |
SHO72277.1 | SHO72735.1 | SAMN05443547_0605 | SAMN05443547_1074 | Starch synthase. | Alpha amylase, catalytic domain. | 0.904 |
SHO72277.1 | panC | SAMN05443547_0605 | SAMN05443547_0606 | Starch synthase. | Pantoate--beta-alanine ligase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family. | 0.669 |
SHO72277.1 | panD | SAMN05443547_0605 | SAMN05443547_0607 | Starch synthase. | L-aspartate 1-decarboxylase; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine. | 0.639 |
SHO72277.1 | radA | SAMN05443547_0605 | SAMN05443547_0610 | Starch synthase. | DNA repair protein RadA/Sms; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. | 0.489 |
SHO72280.1 | SHO72277.1 | SAMN05443547_0608 | SAMN05443547_0605 | Hypothetical protein. | Starch synthase. | 0.620 |
SHO72280.1 | SHO72281.1 | SAMN05443547_0608 | SAMN05443547_0609 | Hypothetical protein. | Hypothetical protein. | 0.679 |
SHO72280.1 | SHO72283.1 | SAMN05443547_0608 | SAMN05443547_0611 | Hypothetical protein. | Protein of unknown function, DUF547. | 0.428 |
SHO72280.1 | panC | SAMN05443547_0608 | SAMN05443547_0606 | Hypothetical protein. | Pantoate--beta-alanine ligase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family. | 0.810 |
SHO72280.1 | panD | SAMN05443547_0608 | SAMN05443547_0607 | Hypothetical protein. | L-aspartate 1-decarboxylase; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine. | 0.833 |
SHO72280.1 | radA | SAMN05443547_0608 | SAMN05443547_0610 | Hypothetical protein. | DNA repair protein RadA/Sms; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. | 0.714 |
SHO72281.1 | SHO72277.1 | SAMN05443547_0609 | SAMN05443547_0605 | Hypothetical protein. | Starch synthase. | 0.480 |
SHO72281.1 | SHO72280.1 | SAMN05443547_0609 | SAMN05443547_0608 | Hypothetical protein. | Hypothetical protein. | 0.679 |
SHO72281.1 | SHO72283.1 | SAMN05443547_0609 | SAMN05443547_0611 | Hypothetical protein. | Protein of unknown function, DUF547. | 0.515 |
SHO72281.1 | panC | SAMN05443547_0609 | SAMN05443547_0606 | Hypothetical protein. | Pantoate--beta-alanine ligase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family. | 0.656 |
SHO72281.1 | panD | SAMN05443547_0609 | SAMN05443547_0607 | Hypothetical protein. | L-aspartate 1-decarboxylase; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine. | 0.678 |
page 1 of 4