STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHO72385.1Two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR. (432 aa)    
Predicted Functional Partners:
SHO72189.1
Two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP.
  
  0.977
SHO72384.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 
  0.975
SHO72987.1
PAS domain S-box-containing protein.
 
0.966
SHO73669.1
PAS domain S-box-containing protein.
 
0.933
SHO73940.1
Response regulator receiver domain-containing protein.
  
  0.923
SHO72188.1
Two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR.
 
 
0.905
SHO72915.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 
  0.887
SHO72916.1
Two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR.
  
  
 
0.883
SHO73670.1
Response regulator receiver domain-containing protein.
 
  0.879
SHO72573.1
Two component transcriptional regulator, winged helix family.
  
  0.871
Your Current Organism:
Flavobacterium cucumis
NCBI taxonomy Id: 416016
Other names: DSM 18830, F. cucumis, Flavobacterium cucumis Weon et al. 2007, KACC 11732, strain R2A45-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.