Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHO71740.1 | SHO72061.1 | SAMN05443547_0050 | SAMN05443547_0386 | Hypothetical protein. | Beta-barrel assembly machine subunit BamA. | 0.705 |
SHO71740.1 | SHO72580.1 | SAMN05443547_0050 | SAMN05443547_0914 | Hypothetical protein. | Transcriptional regulator, TraR/DksA family. | 0.680 |
SHO71740.1 | SHO72924.1 | SAMN05443547_0050 | SAMN05443547_1270 | Hypothetical protein. | RNA polymerase Rpb6. | 0.679 |
SHO71740.1 | lspA | SAMN05443547_0050 | SAMN05443547_0915 | Hypothetical protein. | Signal peptidase II; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family. | 0.655 |
SHO71740.1 | recO | SAMN05443547_0050 | SAMN05443547_0912 | Hypothetical protein. | DNA replication and repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.487 |
SHO71740.1 | rpoA | SAMN05443547_0050 | SAMN05443547_1680 | Hypothetical protein. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.426 |
SHO71950.1 | SHO72580.1 | SAMN05443547_0269 | SAMN05443547_0914 | RNA polymerase primary sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Transcriptional regulator, TraR/DksA family. | 0.637 |
SHO71950.1 | SHO72924.1 | SAMN05443547_0269 | SAMN05443547_1270 | RNA polymerase primary sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | RNA polymerase Rpb6. | 0.957 |
SHO71950.1 | lspA | SAMN05443547_0269 | SAMN05443547_0915 | RNA polymerase primary sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Signal peptidase II; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family. | 0.400 |
SHO71950.1 | rpoA | SAMN05443547_0269 | SAMN05443547_1680 | RNA polymerase primary sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.974 |
SHO71950.1 | rpoB | SAMN05443547_0269 | SAMN05443547_0168 | RNA polymerase primary sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.973 |
SHO71950.1 | rpoC | SAMN05443547_0269 | SAMN05443547_0167 | RNA polymerase primary sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.969 |
SHO72061.1 | SHO71740.1 | SAMN05443547_0386 | SAMN05443547_0050 | Beta-barrel assembly machine subunit BamA. | Hypothetical protein. | 0.705 |
SHO72061.1 | SHO72580.1 | SAMN05443547_0386 | SAMN05443547_0914 | Beta-barrel assembly machine subunit BamA. | Transcriptional regulator, TraR/DksA family. | 0.586 |
SHO72061.1 | SHO72924.1 | SAMN05443547_0386 | SAMN05443547_1270 | Beta-barrel assembly machine subunit BamA. | RNA polymerase Rpb6. | 0.464 |
SHO72061.1 | lspA | SAMN05443547_0386 | SAMN05443547_0915 | Beta-barrel assembly machine subunit BamA. | Signal peptidase II; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family. | 0.428 |
SHO72061.1 | rpoB | SAMN05443547_0386 | SAMN05443547_0168 | Beta-barrel assembly machine subunit BamA. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.508 |
SHO72580.1 | SHO71740.1 | SAMN05443547_0914 | SAMN05443547_0050 | Transcriptional regulator, TraR/DksA family. | Hypothetical protein. | 0.680 |
SHO72580.1 | SHO71950.1 | SAMN05443547_0914 | SAMN05443547_0269 | Transcriptional regulator, TraR/DksA family. | RNA polymerase primary sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.637 |
SHO72580.1 | SHO72061.1 | SAMN05443547_0914 | SAMN05443547_0386 | Transcriptional regulator, TraR/DksA family. | Beta-barrel assembly machine subunit BamA. | 0.586 |
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