Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHO71915.1 | SHO72859.1 | SAMN05443547_0234 | SAMN05443547_1203 | Protein of unknown function. | Transcriptional regulator, MarR family. | 0.526 |
SHO72858.1 | SHO72859.1 | SAMN05443547_1202 | SAMN05443547_1203 | Rhodanese-related sulfurtransferase. | Transcriptional regulator, MarR family. | 0.553 |
SHO72858.1 | SHO72860.1 | SAMN05443547_1202 | SAMN05443547_1204 | Rhodanese-related sulfurtransferase. | Nitroreductase. | 0.609 |
SHO72858.1 | SHO72861.1 | SAMN05443547_1202 | SAMN05443547_1205 | Rhodanese-related sulfurtransferase. | Polyisoprenoid-binding protein YceI; Belongs to the UPF0312 family. | 0.452 |
SHO72859.1 | SHO71915.1 | SAMN05443547_1203 | SAMN05443547_0234 | Transcriptional regulator, MarR family. | Protein of unknown function. | 0.526 |
SHO72859.1 | SHO72858.1 | SAMN05443547_1203 | SAMN05443547_1202 | Transcriptional regulator, MarR family. | Rhodanese-related sulfurtransferase. | 0.553 |
SHO72859.1 | SHO72860.1 | SAMN05443547_1203 | SAMN05443547_1204 | Transcriptional regulator, MarR family. | Nitroreductase. | 0.861 |
SHO72859.1 | SHO72861.1 | SAMN05443547_1203 | SAMN05443547_1205 | Transcriptional regulator, MarR family. | Polyisoprenoid-binding protein YceI; Belongs to the UPF0312 family. | 0.738 |
SHO72859.1 | SHO72987.1 | SAMN05443547_1203 | SAMN05443547_1336 | Transcriptional regulator, MarR family. | PAS domain S-box-containing protein. | 0.407 |
SHO72859.1 | SHO73188.1 | SAMN05443547_1203 | SAMN05443547_1542 | Transcriptional regulator, MarR family. | Protein of unknown function. | 0.484 |
SHO72859.1 | atpE | SAMN05443547_1203 | SAMN05443547_0658 | Transcriptional regulator, MarR family. | ATP synthase F0 subcomplex C subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. | 0.417 |
SHO72860.1 | SHO72858.1 | SAMN05443547_1204 | SAMN05443547_1202 | Nitroreductase. | Rhodanese-related sulfurtransferase. | 0.609 |
SHO72860.1 | SHO72859.1 | SAMN05443547_1204 | SAMN05443547_1203 | Nitroreductase. | Transcriptional regulator, MarR family. | 0.861 |
SHO72860.1 | SHO72861.1 | SAMN05443547_1204 | SAMN05443547_1205 | Nitroreductase. | Polyisoprenoid-binding protein YceI; Belongs to the UPF0312 family. | 0.762 |
SHO72861.1 | SHO72858.1 | SAMN05443547_1205 | SAMN05443547_1202 | Polyisoprenoid-binding protein YceI; Belongs to the UPF0312 family. | Rhodanese-related sulfurtransferase. | 0.452 |
SHO72861.1 | SHO72859.1 | SAMN05443547_1205 | SAMN05443547_1203 | Polyisoprenoid-binding protein YceI; Belongs to the UPF0312 family. | Transcriptional regulator, MarR family. | 0.738 |
SHO72861.1 | SHO72860.1 | SAMN05443547_1205 | SAMN05443547_1204 | Polyisoprenoid-binding protein YceI; Belongs to the UPF0312 family. | Nitroreductase. | 0.762 |
SHO72987.1 | SHO72859.1 | SAMN05443547_1336 | SAMN05443547_1203 | PAS domain S-box-containing protein. | Transcriptional regulator, MarR family. | 0.407 |
SHO73188.1 | SHO72859.1 | SAMN05443547_1542 | SAMN05443547_1203 | Protein of unknown function. | Transcriptional regulator, MarR family. | 0.484 |
atpE | SHO72859.1 | SAMN05443547_0658 | SAMN05443547_1203 | ATP synthase F0 subcomplex C subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. | Transcriptional regulator, MarR family. | 0.417 |