STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHO72991.1TIGR03643 family protein. (96 aa)    
Predicted Functional Partners:
SHO72992.1
Protein of unknown function.
 
     0.822
SHO72838.1
Deoxyribodipyrimidine photolyase-related protein.
 
     0.600
SHO72841.1
NADH-FMN oxidoreductase RutF, flavin reductase (DIM6/NTAB) family.
 
     0.600
SHO72953.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
 
     0.600
SHO72989.1
Hypothetical protein.
       0.566
SHO72990.1
Hypothetical protein.
       0.566
SHO72987.1
PAS domain S-box-containing protein.
       0.523
SHO72988.1
Hypothetical protein.
       0.523
SHO73609.1
Bacteriorhodopsin.
  
     0.488
SHO72955.1
Deoxyribodipyrimidine photo-lyase family protein (cryptochrome); Belongs to the DNA photolyase family.
 
     0.479
Your Current Organism:
Flavobacterium cucumis
NCBI taxonomy Id: 416016
Other names: DSM 18830, F. cucumis, Flavobacterium cucumis Weon et al. 2007, KACC 11732, strain R2A45-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.