Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHO71885.1 | SHO73372.1 | SAMN05443547_0201 | SAMN05443547_1729 | Flagellum-specific peptidoglycan hydrolase FlgJ. | Peptidase S46; Catalyzes the removal of dipeptides from the N-terminus of oligopeptides. | 0.539 |
SHO72655.1 | SHO73372.1 | SAMN05443547_0993 | SAMN05443547_1729 | Dipeptidyl aminopeptidase/acylaminoacyl peptidase. | Peptidase S46; Catalyzes the removal of dipeptides from the N-terminus of oligopeptides. | 0.482 |
SHO73372.1 | SHO71885.1 | SAMN05443547_1729 | SAMN05443547_0201 | Peptidase S46; Catalyzes the removal of dipeptides from the N-terminus of oligopeptides. | Flagellum-specific peptidoglycan hydrolase FlgJ. | 0.539 |
SHO73372.1 | SHO72655.1 | SAMN05443547_1729 | SAMN05443547_0993 | Peptidase S46; Catalyzes the removal of dipeptides from the N-terminus of oligopeptides. | Dipeptidyl aminopeptidase/acylaminoacyl peptidase. | 0.482 |
SHO73372.1 | obg | SAMN05443547_1729 | SAMN05443547_1730 | Peptidase S46; Catalyzes the removal of dipeptides from the N-terminus of oligopeptides. | GTP-binding protein; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. | 0.456 |
obg | SHO73372.1 | SAMN05443547_1730 | SAMN05443547_1729 | GTP-binding protein; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. | Peptidase S46; Catalyzes the removal of dipeptides from the N-terminus of oligopeptides. | 0.456 |