STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHO73411.1Outer membrane transport energization protein TonB. (260 aa)    
Predicted Functional Partners:
SHO73413.1
Outer membrane transport energization protein ExbB.
 
 0.973
SHO73412.1
Outer membrane transport energization protein ExbD.
 
  0.965
SHO73092.1
Hypothetical protein.
  
  0.866
SHO73803.1
CarboxypepD_reg-like domain-containing protein.
  
  0.854
SHO72241.1
Biopolymer transport protein ExbD.
  
  0.805
SHO73410.1
Dihydrofolate synthase / folylpolyglutamate synthase.
       0.780
SHO72682.1
WD40-like Beta Propeller Repeat.
   
 
 0.778
SHO74187.1
Outer membrane protein OmpA.
   
 
 0.778
SHO73093.1
Tetratricopeptide repeat-containing protein.
 
     0.755
SHO72240.1
Biopolymer transport protein ExbD.
   
  0.752
Your Current Organism:
Flavobacterium cucumis
NCBI taxonomy Id: 416016
Other names: DSM 18830, F. cucumis, Flavobacterium cucumis Weon et al. 2007, KACC 11732, strain R2A45-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.