STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHO73907.1Hypothetical protein. (160 aa)    
Predicted Functional Partners:
SHO73905.1
Cysteine-rich domain-containing protein.
       0.833
SHO73906.1
Hypothetical protein.
       0.790
SHO73904.1
4Fe-4S dicluster domain-containing protein.
 
     0.789
SHO73908.1
Phosphoserine phosphatase.
       0.782
SHO72504.1
Protein of unknown function.
  
     0.732
SHO71970.1
Protein involved in gliding motility GldC.
  
     0.721
SHO73903.1
phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein.
       0.705
SHO72547.1
Hypothetical protein.
  
     0.679
SHO73505.1
Acyl-CoA reductase (LuxC).
  
     0.602
SHO72951.1
Protein of unknown function.
  
     0.600
Your Current Organism:
Flavobacterium cucumis
NCBI taxonomy Id: 416016
Other names: DSM 18830, F. cucumis, Flavobacterium cucumis Weon et al. 2007, KACC 11732, strain R2A45-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.