STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHO73989.1Glycosyl hydrolases family 16. (550 aa)    
Predicted Functional Partners:
SHO73991.1
Starch-binding associating with outer membrane.
 
     0.932
SHO73992.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.931
SHO73990.1
Hypothetical protein.
 
     0.922
SHO73988.1
Beta-glucosidase; Belongs to the glycosyl hydrolase 3 family.
 
 0.839
SHO73994.1
Two component regulator propeller.
  
     0.723
SHO72732.1
Glycosyl-hydrolase 97 C-terminal, oligomerisation.
 
  
  0.646
SHO73987.1
Glycosyl hydrolases family 16.
 
    
0.549
SHO73993.1
Hypothetical protein.
       0.536
SHO72726.1
Starch-binding associating with outer membrane.
  
     0.426
Your Current Organism:
Flavobacterium cucumis
NCBI taxonomy Id: 416016
Other names: DSM 18830, F. cucumis, Flavobacterium cucumis Weon et al. 2007, KACC 11732, strain R2A45-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.