STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHO74115.1Hypothetical protein. (122 aa)    
Predicted Functional Partners:
SHO74116.1
Membrane protein YqaA, SNARE-associated domain.
 
     0.793
SHO73522.1
Hypothetical protein.
  
     0.679
SHO74114.1
CBS domain-containing protein.
 
     0.591
SHO74113.1
DNA polymerase-3 subunit epsilon.
 
     0.572
SHO71887.1
Por secretion system C-terminal sorting domain-containing protein.
  
     0.540
SHO71847.1
Hypothetical protein.
  
     0.525
SHO72425.1
Hypothetical protein.
  
     0.525
SHO73138.1
Lipopolysaccharide kinase (Kdo/WaaP) family protein.
  
     0.508
SHO74117.1
Integral membrane protein.
       0.506
SHO74118.1
Miniconductance mechanosensitive channel.
       0.506
Your Current Organism:
Flavobacterium cucumis
NCBI taxonomy Id: 416016
Other names: DSM 18830, F. cucumis, Flavobacterium cucumis Weon et al. 2007, KACC 11732, strain R2A45-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.