STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHO74211.1Hypothetical protein. (56 aa)    
Predicted Functional Partners:
SHO72426.1
Hypothetical protein.
  
     0.758
SHO74083.1
Hypothetical protein.
  
     0.751
SHO73178.1
Hypothetical protein.
  
     0.721
SHO73081.1
Hypothetical protein.
  
     0.712
SHO74220.1
Hypothetical protein.
  
     0.708
SHO71847.1
Hypothetical protein.
  
     0.707
SHO73025.1
Hypothetical protein.
  
     0.677
SHO73522.1
Hypothetical protein.
  
     0.675
SHO72201.1
Protein of unknown function.
  
     0.671
SHO72281.1
Hypothetical protein.
  
     0.663
Your Current Organism:
Flavobacterium cucumis
NCBI taxonomy Id: 416016
Other names: DSM 18830, F. cucumis, Flavobacterium cucumis Weon et al. 2007, KACC 11732, strain R2A45-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.