STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHO74254.1Helix-turn-helix domain-containing protein. (270 aa)    
Predicted Functional Partners:
SHO74253.1
Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein.
 
    0.915
SHO71950.1
RNA polymerase primary sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
 
 0.713
SHO74252.1
DNA transformation protein.
       0.578
SHO74251.1
AraC-type DNA-binding protein.
 
 
 0.507
SHO72557.1
NADP-dependent alcohol dehydrogenase.
   
    0.493
SHO74255.1
Transposase; Partial gene; manually curated.
       0.486
SHO73289.1
Outer membrane receptor for ferrienterochelin and colicins.
  
     0.427
SHO73791.1
AraC-type DNA-binding protein.
  
 
0.408
SHO74329.1
Transcriptional regulator, AraC family.
  
 
 0.405
Your Current Organism:
Flavobacterium cucumis
NCBI taxonomy Id: 416016
Other names: DSM 18830, F. cucumis, Flavobacterium cucumis Weon et al. 2007, KACC 11732, strain R2A45-3
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