STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHO74272.1DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains. (221 aa)    
Predicted Functional Partners:
SHO72987.1
PAS domain S-box-containing protein.
  
 0.995
SHO74273.1
Hypothetical protein.
 
  0.982
SHO73669.1
PAS domain S-box-containing protein.
  
 0.969
SHO73256.1
Histidine kinase.
  
 0.891
SHO71734.1
Signal transduction histidine kinase.
  
 0.844
SHO74275.1
Hypothetical protein.
 
     0.830
SHO72552.1
Signal transduction histidine kinase.
  
 0.785
SHO74218.1
Signal transduction histidine kinase.
  
 0.785
SHO73922.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
 0.761
SHO74274.1
Hypothetical protein.
       0.655
Your Current Organism:
Flavobacterium cucumis
NCBI taxonomy Id: 416016
Other names: DSM 18830, F. cucumis, Flavobacterium cucumis Weon et al. 2007, KACC 11732, strain R2A45-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.