Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
APL_0340 | sodC | APL_0340 | APL_0004 | Hypothetical protein. | Superoxide dismutase [Cu-Zn] precursor; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family. | 0.452 |
APL_0340 | sufI-2 | APL_0340 | APL_2035 | Hypothetical protein. | Copper-containing nitrite reductase precursor; Belongs to the multicopper oxidase family. | 0.659 |
APL_1355 | sodA | APL_1355 | APL_0251 | Hypothetical protein. | Manganese superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | 0.650 |
APL_1355 | sodC | APL_1355 | APL_0004 | Hypothetical protein. | Superoxide dismutase [Cu-Zn] precursor; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family. | 0.455 |
APL_1482 | copA | APL_1482 | APL_1265 | Hybrid peroxiredoxin HyPrx5. | Copper-transporting P-type ATPase. | 0.567 |
APL_1482 | msrA | APL_1482 | APL_1024 | Hybrid peroxiredoxin HyPrx5. | Peptide methionine sulfoxide reductase MsrA; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | 0.988 |
APL_1482 | sodA | APL_1482 | APL_0251 | Hybrid peroxiredoxin HyPrx5. | Manganese superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | 0.512 |
APL_1482 | sodC | APL_1482 | APL_0004 | Hybrid peroxiredoxin HyPrx5. | Superoxide dismutase [Cu-Zn] precursor; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family. | 0.496 |
asd | sodC | APL_0005 | APL_0004 | Aspartate-semialdehyde dehydrogenase Asd; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family. | Superoxide dismutase [Cu-Zn] precursor; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family. | 0.815 |
copA | APL_1482 | APL_1265 | APL_1482 | Copper-transporting P-type ATPase. | Hybrid peroxiredoxin HyPrx5. | 0.567 |
copA | merP | APL_1265 | APL_1857 | Copper-transporting P-type ATPase. | MerP; Copper chaperone. | 0.765 |
copA | msrA | APL_1265 | APL_1024 | Copper-transporting P-type ATPase. | Peptide methionine sulfoxide reductase MsrA; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | 0.740 |
copA | sodA | APL_1265 | APL_0251 | Copper-transporting P-type ATPase. | Manganese superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | 0.499 |
copA | sodC | APL_1265 | APL_0004 | Copper-transporting P-type ATPase. | Superoxide dismutase [Cu-Zn] precursor; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family. | 0.999 |
copA | sufI-2 | APL_1265 | APL_2035 | Copper-transporting P-type ATPase. | Copper-containing nitrite reductase precursor; Belongs to the multicopper oxidase family. | 0.939 |
hktE | msrA | APL_0988 | APL_1024 | Catalase; Belongs to the catalase family. | Peptide methionine sulfoxide reductase MsrA; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | 0.750 |
hktE | sodA | APL_0988 | APL_0251 | Catalase; Belongs to the catalase family. | Manganese superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | 0.672 |
hktE | sodC | APL_0988 | APL_0004 | Catalase; Belongs to the catalase family. | Superoxide dismutase [Cu-Zn] precursor; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family. | 0.734 |
merP | copA | APL_1857 | APL_1265 | MerP; Copper chaperone. | Copper-transporting P-type ATPase. | 0.765 |
merP | msrA | APL_1857 | APL_1024 | MerP; Copper chaperone. | Peptide methionine sulfoxide reductase MsrA; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | 0.417 |
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