Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
APL_0509Bacteriophage capsid protein. (506 aa)    
Predicted Functional Partners:
APL_0510
Putative Clp-like protease; Belongs to the peptidase S14 family.
 
    0.949
APL_0508
Predicted bacteriophage tail assembly protein.
 
  
 0.904
APL_0511
Hypothetical protein.
 
    0.895
APL_0514
Hypothetical protein.
  
   0.762
APL_0513
Putative phage tail component.
  
    0.702
APL_1394
Hypothetical protein.
  
     0.671
APL_0512
Hypothetical protein.
       0.569
APL_0515
Hypothetical protein.
       0.569
APL_0507
Hypothetical protein.
  
    0.544
APL_0270
Hypothetical protein.
  
     0.510
Your Current Organism:
Actinobacillus pleuropneumoniae
NCBI taxonomy Id: 416269
Other names: A. pleuropneumoniae serovar 5b str. L20, Actinobacillus pleuropneumoniae L20, Actinobacillus pleuropneumoniae serovar 5b str. L20, Actinobacillus pleuropneumoniae serovar 5b strain L20
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