Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
APL_0935 | cps5C | APL_0935 | APL_1579 | Aerobic respiration control sensor protein. | Region 2 capsular polysaccharide biosynthesis protein; Pubmed:9632602. | 0.596 |
APL_0935 | degS | APL_0935 | APL_0742 | Aerobic respiration control sensor protein. | Protease DegS precursor. | 0.494 |
APL_0935 | rpsA | APL_0935 | APL_0740 | Aerobic respiration control sensor protein. | 30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 0.465 |
cmkA | degS | APL_0741 | APL_0742 | Cytidylate kinase. | Protease DegS precursor. | 0.714 |
cmkA | rpsA | APL_0741 | APL_0740 | Cytidylate kinase. | 30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 0.965 |
cps5C | APL_0935 | APL_1579 | APL_0935 | Region 2 capsular polysaccharide biosynthesis protein; Pubmed:9632602. | Aerobic respiration control sensor protein. | 0.596 |
cps5C | degS | APL_1579 | APL_0742 | Region 2 capsular polysaccharide biosynthesis protein; Pubmed:9632602. | Protease DegS precursor. | 0.480 |
degS | APL_0935 | APL_0742 | APL_0935 | Protease DegS precursor. | Aerobic respiration control sensor protein. | 0.494 |
degS | cmkA | APL_0742 | APL_0741 | Protease DegS precursor. | Cytidylate kinase. | 0.714 |
degS | cps5C | APL_0742 | APL_1579 | Protease DegS precursor. | Region 2 capsular polysaccharide biosynthesis protein; Pubmed:9632602. | 0.480 |
degS | ecfE | APL_0742 | APL_0412 | Protease DegS precursor. | Putative zinc metalloprotease. | 0.493 |
degS | frr | APL_0742 | APL_0570 | Protease DegS precursor. | Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family. | 0.475 |
degS | nlpI | APL_0742 | APL_0576 | Protease DegS precursor. | Lipoprotein NlpI-like precursor; May be involved in cell division. | 0.628 |
degS | rplI | APL_0742 | APL_1169 | Protease DegS precursor. | 50S ribosomal protein L9; Binds to the 23S rRNA. | 0.474 |
degS | rpsA | APL_0742 | APL_0740 | Protease DegS precursor. | 30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 0.501 |
degS | rseA | APL_0742 | APL_0395 | Protease DegS precursor. | Putative sigma-E factor negative regulatory protein; An anti-sigma factor for extracytoplasmic function (ECF) sigma factor sigma-E (RpoE). ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut periplasmically (site-1 protease, S1P, DegS), then within the membrane itself (site-2 protease, S2P, RseP), while cyto [...] | 0.876 |
degS | tolR | APL_0742 | APL_0301 | Protease DegS precursor. | Biopolymer transport protein TolR; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity. | 0.622 |
ecfE | degS | APL_0412 | APL_0742 | Putative zinc metalloprotease. | Protease DegS precursor. | 0.493 |
ecfE | tolR | APL_0412 | APL_0301 | Putative zinc metalloprotease. | Biopolymer transport protein TolR; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity. | 0.440 |
frr | degS | APL_0570 | APL_0742 | Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family. | Protease DegS precursor. | 0.475 |
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