Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rec2Recombination protein 2. (764 aa)    
Predicted Functional Partners:
comF
Competence protein F.
 
  
 0.873
smf
Protein smf (DNA-processing chain A).
 
  
 0.869
pulG
Hypothetical protein.
  
  
 0.852
apfC
Fimbrial biogenesis protein; Pubmed:14742510.
  
  
 0.759
apfB
Fimbrial biogenesis protein; Pubmed:14742510.
 
  
 0.759
comEA
DNA uptake protein.
 
  
 0.758
apfD
Fimbrial leader peptidase; Pubmed:14742510.
  
  
 0.734
radC
DNA repair protein RadC-like protein; Belongs to the UPF0758 family.
 
  
 0.681
ftsK
DNA translocase FtsK.
 
  
 0.654
uvrA
UvrABC system protein A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate.
      
 0.641
Your Current Organism:
Actinobacillus pleuropneumoniae
NCBI taxonomy Id: 416269
Other names: A. pleuropneumoniae serovar 5b str. L20, Actinobacillus pleuropneumoniae L20, Actinobacillus pleuropneumoniae serovar 5b str. L20, Actinobacillus pleuropneumoniae serovar 5b strain L20
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