STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylAXylose isomerase; Belongs to the xylose isomerase family. (439 aa)    
Predicted Functional Partners:
xylB
Xylulose kinase (Xylulokinase).
 
 
 0.984
fruA
PTS system fructose-specific EIIBC component; Includes: Fructose-specific phosphotransferase enzyme IIB component; Fructose permease IIC component.
     
 0.944
scrK
Fructokinase; Belongs to the carbohydrate kinase PfkB family.
     
 0.905
lacZ
Beta-galactosidase.
    
 0.823
xylR
Xylose operon regulatory protein.
 
   
 0.778
xylF
D-xylose-binding periplasmic protein precursor.
 
  
 0.730
ptsH
PTS system phosphocarrier protein HPr.
      
 0.635
xylH
Xylose transport system permease protein xylH; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.503
galM
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
 
   
 0.475
xylG
D-xylose transport ATP-binding protein xylG; Part of the ABC transporter complex XylFGH involved in xylose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Xylose importer (TC 3.A.1.2.4) family.
     
 0.411
Your Current Organism:
Actinobacillus pleuropneumoniae
NCBI taxonomy Id: 416269
Other names: A. pleuropneumoniae serovar 5b str. L20, Actinobacillus pleuropneumoniae L20, Actinobacillus pleuropneumoniae serovar 5b str. L20, Actinobacillus pleuropneumoniae serovar 5b strain L20
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